Basic Information | |
---|---|
Taxon OID | 3300031649 Open in IMG/M |
Scaffold ID | Ga0307514_10000050 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 325319 |
Total Scaffold Genes | 417 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 264 (63.31%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.6253 | Long. (o) | -120.532 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010438 | Metagenome | 303 | Y |
F042672 | Metagenome | 157 | Y |
F060560 | Metagenome | 132 | Y |
F063295 | Metagenome / Metatranscriptome | 129 | Y |
F079413 | Metagenome / Metatranscriptome | 115 | Y |
F086388 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307514_10000050336 | F079413 | AGG | LADAAHQTIVRSYRLNLGSETELRIQVKELLFDVAYRLKVIDNKKAWFTQMEVLDLIYHQFCFTANRLGRQLTTSQFFQPLTPPMLALVAAAIHCAPSEYAT |
Ga0307514_10000050349 | F063295 | GGA | VGKQHPGRCYGVLNGHLGWQPQRLFKIKLQNEDGAFVEYWLSLVLTTIPQNSGNLDPVTKFVQVRTTPVAVNLQVFSGGSIVSYAHVIPEIATRSKTADGQKERWIVNSHIDLVTWNDVY |
Ga0307514_10000050368 | F086388 | N/A | MENADKTAKHLQMAAVKKSNRTLAADDIDCCVSQIDCLCEWHVVNIYLEILNCRHRVVASQIGHQVEPYSLSLVEILSSTCSDKPR |
Ga0307514_10000050382 | F010438 | GGAG | MWNRWPFMSASDLEMVSYATRRVAKALAEAPHLQIIVTYWNTAMQQSNIWSIAFEAGTKEILKEVR |
Ga0307514_10000050383 | F060560 | N/A | MIDDKDGQISSPLIMFRCTALRHAPLEWQKNKGVHPKASKSKLKADRPDRSNYFNYKNESGKIASCCTVMGRKLLTLPGVAHTYTFLMNTWNTLPESYQQRVYKNTLATVKRQIQQAENPTPAVVISVEAACVDNAIVLDYLTSEVELDEPEIGSTDLNIPIDNDCMDDELHFGMRGDSG |
Ga0307514_10000050396 | F042672 | N/A | VVVIPTKFKDLHSWADCVDGFIQVVQQTNKIHIVSVGTRVGPAHLVQKNAASGGIDSVWLVDNHVDLDTYWTVD |
⦗Top⦘ |