Scaffold Ga0307514

Basic Information
Taxon OID	3300031649 Open in IMG/M
Scaffold ID	Ga0307514_10000079 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	260903
Total Scaffold Genes	299 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	191 (63.88%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

260903

Total Scaffold Genes

299 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

191 (63.88%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6253	Long. (^o)	-120.532	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6253

Long. (^o)

-120.532

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F010438	Metagenome	303	Y
F038958	Metagenome	164	Y
F047400	Metagenome	149	Y
F048690	Metagenome	147	Y
F060560	Metagenome	132	Y
F081952	Metagenome / Metatranscriptome	113	Y
F081959	Metagenome	113	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000079101	F006048	AGGAG	MLNQRPTLDITGSNWYQVCAHVGKVKSHFIQSARDNIAELYDLHRFESAAERLEFIDSLLADNKYLFPIAEHVDGSVRGPNPTQRESKAANESPVSTLLPGGSNPVVYLHQILSLGE
Ga0307514_10000079102	F010438	GGA	MSASDLQTVSYATRRVAKALAEAPHWQIIETYWNTAMQQNNIWSIAFEACTQEIFKEVC
Ga0307514_10000079103	F004891	GGA	MISRASGLGMGVGRFSRPLRGVGVLAMPDAGLDTTRRVESVCKVPPGAGVLRLLVTGVAVGVFIDRRSVADGVEATR
Ga0307514_10000079135	F038958	N/A	MTHAIANLFVDVHPSKAKLTLFGDGNCFLIASTVSVDSLRKILLRVLADGNTNSLHNVLYDRRSSRFDIAFHGICAETKPNMRYRFQVSW
Ga0307514_10000079185	F004891	GGA	MIARASGFGIGVGRFSRSLRGVGVLAMPDAGLDTTHRVESVCIVPLGACVFRLLVPGIAVGVIIARRCVVDGVEATP
Ga0307514_10000079186	F010438	N/A	MVSVSRSIHRFGHSDMMRLVFATGTLLEFYMWNRRLFMSASDLEMESYATRRVAKAFAEAPHWQIMETYWNTAMQQNNIWSIPFEARTKEILKEVC
Ga0307514_10000079187	F006048	N/A	MVDITRSKRYQVRAQFDKVKSHFIQSVSDNIAELYDLHRFESAAEHLEFIDSFLAENSYPFPVAEHVAGGVRGPNPTQRESKADNAWLGSTLLPGRGNPAVYLHQILSSGE
Ga0307514_10000079188	F060560	GGA	MINDKDGHIPSPLIMFTCTALRHALLEWEKNKGVHPKASKSKLKANRPDRSNYFNHKNDGGKIASCCAVTGRKLLTSPGVAHTYTFLMNTWNTLPESYQQRVYNNPLATVKRQIQQAENPTPAVVISGEAAGVDNIILLDYLVSEVAFEEPEIGRTDPNIPIDNNCTDD
Ga0307514_10000079201	F010438	N/A	MVSGSRSIHRFGHSDMTRLVFAMGRLLELYRWIRRPFMSASDMETVSYATLRVSKASAETPHWQIIETYWNTAMQQNIIWSIAFEARTKEILKEVS
Ga0307514_1000007933	F004891	GGA	MIARASGFGMGVGRFSRPLRGVGVQAMPDAGLDRRRRVESVCVIPLGAGVFRLLVPGVAVGVIIDHLSVADGVEVTL
Ga0307514_1000007934	F047400	AGGAG	MAQRVAGKHDQWCGYMTVLVVNHGIRKSISILTAVIRPMIKFDVDKLLDCICPEVQWMLAIR
Ga0307514_1000007936	F081959	GGA	MSTGMRARMATMRIRRKKHRKPMMDQRRMWSTEGIVLESGNIRQYISDM
Ga0307514_100000796	F081952	N/A	MVNAPKKNFTPLPAGRYGKSRKCSTQRRHKVNEGKSGLVAERIRALGGLRSLRSKKKLAAEKRRETHFLSNEEKEKWIEDYVERETAGARK
Ga0307514_100000797	F048690	GAG	MLHVMDNMEVSCVFYVKVSTFTHLEQSKIGLLTVNKSGIMTLIVKHDMIVSISFMLYPGDYLRQTSADIRSLELHPINI
Ga0307514_100000798	F008227	N/A	MDTEPPLPGESGSNTGRLAGATTNTDILGTQQDHRHKLVHRDAADAATNHVTQDAHLKIVRKTGSRRNKKQHAVGWEYIHINVISGQLTV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307514_10000079

Overview

Ecosystem & Geography

Associated Families

Sequences