Scaffold Ga0307514

Basic Information
Taxon OID	3300031649 Open in IMG/M
Scaffold ID	Ga0307514_10000086 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	255868
Total Scaffold Genes	336 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	221 (65.77%)
Novel Protein Genes	16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

255868

Total Scaffold Genes

336 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

221 (65.77%)

Novel Protein Genes

16 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

11 (68.75%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6253	Long. (^o)	-120.532	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6253

Long. (^o)

-120.532

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F046750	Metagenome	150	Y
F048690	Metagenome	147	Y
F051592	Metagenome	143	Y
F063295	Metagenome / Metatranscriptome	129	Y
F079403	Metagenome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y
F081952	Metagenome / Metatranscriptome	113	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000086129	F079403	N/A	MGPQNRHDGKHPDAMIKDFRALLDNTQDATHCVAIYSSTRKFIKHNSCNKTYISDEQLHTIELCIYHGTKIQVEGLDGERISQMCRCTGSQCWRRGDRRNDWVWVKQCPGRCYGALNGRLPWQLQRLFKIKLQNEDGAFVEYWIALALTTIPENSGNLDPVSKFVQVRNAPAAVALQVFSVGNIVGCAHVIPEIATSSKTGDGRNVRWIVNSHIDLATWNDVYN
Ga0307514_10000086140	F010438	GGAG	MWNRRPFMSTRDLEIVSYATRRVAKALAEGPHWQIIETYWNTAMQQNNIWSIAFEARTKEIL
Ga0307514_10000086141	F006048	AGGAG	MLNQQPTLDITHSNRYQVRAQVDKVKSHFIQSASDNIVELYDFHWFESAAEHLEFIDYLLADNKYLFPIAERVEGGVLGSIPTQRESKAANEWLASTSLHGGSNPAVYLHQILSSGE
Ga0307514_10000086148	F063295	GGAGG	VLNGRLLWQLQQLFKIKLLNEDGAFVEYWLALALRTIPENPGKLNPVSKFVQVRNAPAAIALQVFTVGNIVDCAHVIPEIATSSKIGDRRNERWIVNSHIDLATWSDVYN
Ga0307514_10000086162	F010438	GGAG	MWNRWPCISASDLEMVSYAKRRAAKALAEAPHWQIIETYWNTAMQQNNIWSRAFEVRSKEILKEVC
Ga0307514_10000086163	F006048	AGGAG	MLNQWPTVDITRSNQYQVCAQVNKVKSHFIQSATDNIAELYDFHCFESAAERLEFIDSLLADNKYLVPVAEHVEGGVRSPNPTQRESKADNEWLASTSLPGGSNPTVYLHQILSSGESPRQVC
Ga0307514_10000086164	F046750	GGA	MINDKDSHIPSPLIMFTCTALRHALLEWQKNKGVHPKASKSKLKADRPDRSNYFNHKNDGGKITSCCPVRGRKLLTSPGIADTYTFLMNIWNTLPESYQQRVYNNTLATVKRQIQQVENPTPAVVSSVNAAHVDNGILLDHLASDMALEEPEIRSTDPNIPIDNNCKDDKLHFGMPGGSGDYEDDGDECDDRDAIPTASWQRRPATELEMFDLGTSHVNG
Ga0307514_10000086170	F051592	GAG	VRLHEVKNPFLEVVKHANLHCMEEVGLREVAHNTGNVSKHVESSVNMVRREFSIGCRGVGIAEHSI
Ga0307514_10000086172	F079403	N/A	MRPQNRRDGKHPDTMIKDFRALLDNTQDATHRAAIYRDTWEFIKHKSRNKTYISDEQLHAMEFCIYHGIKVQVEGLEGERTSQMCRCTGSQSWRGGNRWNDCVRVKQRPGRCYGALNWCLPWQLQPLLKVKLQNEDGAYVEYWLALALTTIPENTGNLDPVSQFVQVRKAPAAIALLVFSVGNIVSGERIIREIATSSKTVDGQNERWIVNSHIDLATWNDVYS
Ga0307514_10000086179	F080709	N/A	MVQLSTRKREIGEDGGNHHEKLGLVRISYASQLTIPETACTSPDPEGNNTDTRSSKPNQASSKPNQASRTPNFS
Ga0307514_10000086268	F081952	N/A	MVNAPKKNFLPIPAGRYGKSTKRSTQQLHQANEGKSGLEAERVRALGALRSLRSKKKLVVER
Ga0307514_10000086295	F048690	GAG	MLQDMDNMEASCVFYVKVSTFTHLEQSKTSLLTASKSGIVRLTVQHHLIVNVSFMYYPGDPLRQTSANVLSLEQWPIYI
Ga0307514_10000086308	F004891	GGTGG	MIAWASGLGMGVGRFSRWVRGVGVLAMPDAELDTTRHIQSVCEVPIGAGVLQLLVPSVAVGVIIDHHGIVDGVEVTQ
Ga0307514_10000086309	F010438	GGAG	MWNRRPFMSASDLETVSYVIRRVAKALAEAPHWQLIETYWNTTMQQNNIWSIAFEARTKEILKEVY
Ga0307514_10000086310	F046750	N/A	VNNRGKYADGFYNSMIDDKDSHIPSPLTTSTCTALCHTLLEWEKNKGVHPKACKSKLKAERPDHSNYFNYKNDSGKNASYCAATGRKLLTSPGIADTYTFLMNTWNTLPESYQQRVYKNFLATVKHPIQQAENPMPAVVISVKAARVDNFILLDYLTSKVALEEPEIGITDPNIPIDNDCMDDKLYFRIAGGIGDYKDKGCESDQRDTIPTTSWRQPAATELERFDLGTSDVDWYEGADGDHADVDEEEEASQADDGSMQNMDN
Ga0307514_10000086318	F048690	GAG	MLQDMDNMEASCVFYVKVGKFTHLEQSKTSLLTVNKPETVRLTVQHDFSVSVSFMYYPGDSLRQTSTVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307514_10000086

Overview

Ecosystem & Geography

Associated Families

Sequences