NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000233

Scaffold Ga0307514_10000233


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000233 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)144214
Total Scaffold Genes164 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (37.20%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006048Metagenome382Y
F010438Metagenome303Y
F016905Metagenome / Metatranscriptome243Y
F046750Metagenome150Y
F047400Metagenome149Y
F059517Metagenome133Y
F063295Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000233104F006048N/AMLNQRPMVDITRSNQYQICAQVDKVKFHFIQSARDNSAEHYDLHCFESTTEDLEFIDSLLADNKYLFPVAERVEGGVRGPYPTQRESKADNKWLASTLLPGGSNPAGYLHQILSSGK
Ga0307514_10000233105F046750GGAMISGKDGHILSPLIMFTCTTWCHALLECQKNKGVHPKASKSKLKADRSDRLNYVNHKNDSGKIASCCAVTGRKMSTSPGFADMYTFLMNTWNTLPESYQQRVYNNTLATVKRQIQQAENPTPAVVISVEVARVHNAILFDYLASEVELEEPEIESTDPNIPIDNNCTNDEFHFEIPGGSADYEDEGDESDDRDAIPTASRRQWPTTELEKVXAGNQRCRQVXGQGWRRCGYGXGXRSIASRXWINAEYGGLRA
Ga0307514_10000233134F010438N/AMRLVFATGRLLELYMWNRRPFMSANDLETVRYAMRCVSKALAEAPHWQMIETYWNTAMLQNNIWSIAFEARTKEILNEVF
Ga0307514_10000233135F059517N/ALDITRSNQYQVRAQVDKVKSHFIQSARENIAELYDLHRFESAAERLEFIDSLLADNKYLFPVAERVEGGVHGPNQTQRESKAANE
Ga0307514_10000233145F016905GAGMPGHQYTPAEYALQKIVESFGNLLSELAEHHLTHTYAVVFRFCELENIHYLVLRYLNMGALPLEEFSEEWLFEGEV
Ga0307514_10000233163F046750GGAMIDDKDGYIPSPLIMFTCSALRHALLEWQKNKGVHPKASKSKLKVDRPDRSNYFNCKNDGGKIVSCYTVTGRKLLTSPGVVDMYTFLMNTWNTLPESYQQRVYNNTLATVKRQIQEAENPMHAMVISVEAACVDNAILLDYLTSEVALWEPEIGSTDSNIPIVNNCTDDELHFGMPGGNGDLEDEGDESDAIPIASRRRWAATELERFDLGTSDVDSYEGEDGDDADADQE
Ga0307514_1000023385F047400N/AMNTSVRLPLQESMAQSGAGKHDQWRVYITILVVNNETIKSIYILTAIIHLMIKFHGDKLLDCLCQEIN
Ga0307514_1000023394F063295N/AMKLLNKDGAFVEYWLALALTTIPGNSGNLDSILKFVKVKNAAAAIALQIFCVVNIFSCAYEIPEIATSGNTGDGRNEQWIVNSHIDLATWNDVYN

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