NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000458

Scaffold Ga0307514_10000458


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000458 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87246
Total Scaffold Genes96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (42.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008227Metagenome336Y
F026456Metagenome197Y
F063295Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000045866F063295GGAGGMLNGRLPWQLQRLFKIEFQNEDGAFVEYWLALALTKIPENSGNLDPVSKSVQVRQAPAAVALQVFRVGNIVRCAHVLQEIATSCKTGDERNERWIVNSHIDLVTWNDV
Ga0307514_1000045887F026456N/AMFDRMDGVIRALAKKKTQLKADLFFAVQLARQKLSKYYAEVTPTMDMLLISAHIFDPFSKLQSFRKWDKGMDINPEDETSYTT
Ga0307514_1000045888F004778N/AMTCELQSILEASGIDWPAFRNHILCMAHVIQLALGAFMSSLGVKGRTKSWEAHECDQQFGEHESIDVGNSQRLRKEGNARINKVSARRPGLGKIIEKVRIS
Ga0307514_1000045892F008227N/AMMDTQPPPPGESGSNTGRFAGATSHTEILGTQQERRHKLVHHDAANAATKHMTQDAHLKMVRKTGSTKYKKQREVGCEXIYIEAIGGQLTV
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