Basic Information | |
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Taxon OID | 3300031649 Open in IMG/M |
Scaffold ID | Ga0307514_10000463 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 86486 |
Total Scaffold Genes | 114 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 73 (64.04%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.6253 | Long. (o) | -120.532 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004891 | Metagenome / Metatranscriptome | 419 | Y |
F006048 | Metagenome | 382 | Y |
F010438 | Metagenome | 303 | Y |
F016905 | Metagenome / Metatranscriptome | 243 | Y |
F048690 | Metagenome | 147 | Y |
F060560 | Metagenome | 132 | Y |
F081952 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307514_10000463100 | F010438 | GGA | MWNRRPFMSASDLETVSYVMRRISKALAEAPQWQIIEMYWNTAVQQNNIWSIAFEVRTNEILKEVC |
Ga0307514_10000463101 | F004891 | GGAG | MIVRATGLGMGVGRFSRPLRGVGVIAMPNAGLDTTRHIEVPPGAVVLRLLVTGMAVGVFIDRRWVADGVEVTR |
Ga0307514_1000046330 | F016905 | GAG | MPGHQYTPAEYALQKIVASFGNFLFELAKHHLTHIYAVVFRFCQLENINYLVLRYLNTGALPFEEFSEEWLYDGEV |
Ga0307514_100004634 | F081952 | N/A | MVNAPKNNVLPLPAGRYGKLTKQFTQRRHKANESISGFEAERVQALGALRSLRSKNKLVAEKLREMHYLSNEAKEKLIEHYISKM |
Ga0307514_100004635 | F048690 | GAG | MLQDMDNMEASCIFYVKVSTFTHLEQSTTSLLTVNKSGIVRLTVQHYLIVSISFMYYPWDSLRETSATVFSLEQRPIYS |
Ga0307514_1000046398 | F060560 | AGG | MYADGFYNSMIDDKDGHIPSPLIMFTCTALCHALLEWQKNKGIHLKASKSKLKADRPDLSNYFNYKYDGGKNTSCCAATGRKLLTSPGVADTYTLLMNTWNTLPESYQQRVYKNTFATVNRQIQQAENPTPAVVISVEAARVDNAILLAYLTSEVTLEEPEIRSTDPNIPIDNNCTDDQLHFGMPGGSGD |
Ga0307514_1000046399 | F006048 | GAG | MLKQWPTLDITCSNRHHVRAQVDKVKSHFIQSARDTIAGLYDLHYFESAAEHLEFIDSLLADIKYLLPVAEQMEGGVRGPNPTQRELKATNEWPASTLLPGGSTPAVYLHQILSSGE |
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