NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000699

Scaffold Ga0307514_10000699


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000699 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58526
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F048690Metagenome147Y
F081952Metagenome / Metatranscriptome113Y
F088003Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000069941F081952AGGMVNAPKKNFSRPPAGKYGKSTKQSTPRHHQTNKGKSGLVEERVRALGALCSLRSKRKLAVEKRHETDFLSNEEKEKWIRDCVERETPVARK
Ga0307514_1000069949F004778N/AVLDRFELTDGCLLGIKMNNASSNYSMTRELQSTLEASGIGWPALRNHIPWMAQVMQLDLGAFMSSLGVKGCTKSWEAPERDQQFGENESIDIGKSQRLRKEGNARINKVSAMRPGLAKIVEKVRIS
Ga0307514_1000069954F081952N/AMVNALKMNCTPLPAGRYGKSKKRSTQRHHQANEGKSGLESERIRALGALRSLRLKKKLAVEKLQETHFLSNEEKEKWNEDYAERETAGARKRVEDAQVAVQQE
Ga0307514_1000069955F048690GAGMLQVMDNMEVSCVLYVKVSMFTHLEQCKIGLLTVNKAGIMTLTVQHDMIVSVDFMLYPGVYLRQTSADVRSLEQHPISI
Ga0307514_1000069957F088003GAGGVREIEHHDVVSAGIFADEFPDKRPREWTKQALIPLEEATEAYMIEVTAEYH
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