NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10002043

Scaffold Ga0307514_10002043


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10002043 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21806
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (42.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008227Metagenome336Y
F019765Metagenome227Y
F089625Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000204319F019765GAGMLQVMDNMEVSCIFYFKVSTFTHLEQSKTTQLTVNKSRIITLTVQHDMIVSVSFM
Ga0307514_1000204320F008227N/AMDTQPPSAGESGSNTGRLAGATSNTEHLGTQPERSHKSVHRDAANVATKHMTQDANLKIVRKTGSSKNKKQHPVRCKYILIVANGSQLTE
Ga0307514_100020433F089625N/AMTLLGFATGLSLNQAESQPVQYNQDENNYGRQQMMNGQYIKMSVNGASTICGLVSTVIHQ
Ga0307514_100020435F004778N/AMLDRFELTDGCLLGIMTDNASLNYLMTRELQSTLEASGIEWPAWRNHIPCMAHVVQLALGAFMSSLGVTGRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARINKVSAMRPGFAKIFQKVRIS
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