NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10003021

Scaffold Ga0307514_10003021


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10003021 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16626
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F047400Metagenome149Y
F063295Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000302110F004891AGCAGMVARPSGLGMGEGRMSRPLQGLGVLAMPDARQDTIRWVESVCEVPPGAGLLLLLVPGLAVVGIIDRRCVVDGVTATD
Ga0307514_1000302112F047400GGAMNTFVHVPLQESMVQRSAGKRDEWRPYMTVLVINHGIIKSISILTTVISPMIKFDVDKPRDRFHQEVNWTLAIR
Ga0307514_100030212F004891GGAMIARASGCGMGVGRFSRPQRGVGVLAMPGAGLDTTRRIESVCMVPLGAGVLRLLVPGVAVGVITDHRCVADVVEATSCVISATREFFTEDEGVEF
Ga0307514_100030218F063295N/AMCYGALNGRSPWQLQRLLKIKVLNEDGAFVEYWLALVLTTIPENSGNLDPVSKFVQARKAPAVIALQVFSVGSIVGCAHVIPEIATNSKTGDGRNERWIVNSHIDLATWNDVYN
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