NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308005_10033953

Scaffold Ga0308005_10033953


Overview

Basic Information
Taxon OID3300031656 Open in IMG/M
Scaffold IDGa0308005_10033953 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #67
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1341
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)26
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025595Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0308005_100339531F025595AGGAGGMTIDINGLSTKIEVLTSIKENIQDGDTDTAIDMVNQMIELEPQPGQSRPVADALDHHQIMQKG
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