Scaffold Ga0307986_10007917

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307986_10007917

Scaffold Ga0307986_10007917

Overview

Basic Information
Taxon OID	3300031659 Open in IMG/M
Scaffold ID	Ga0307986_10007917 Open in IMG/M
Source Dataset Name	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6770
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5958	Long. (^o)	78.1913	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058644	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307986_100079172	F058644	N/A	MKPAVKAEDSLAPNLQEIKLEAKNVEKTNPITGKKIAYIIRINAVIKISIIFPNSGHLGFISGLKIRNKDEDIKKKETIYGYVFGPI

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