NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307986_10017235

Scaffold Ga0307986_10017235


Overview

Basic Information
Taxon OID3300031659 Open in IMG/M
Scaffold IDGa0307986_10017235 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #82
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4222
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019650Metagenome / Metatranscriptome228N
F022458Metagenome / Metatranscriptome214Y
F068851Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0307986_100172351F068851N/AMANTDNKCKDLEVRDYYSEKLYDITENSLEDLYNLQQKTQSMYFEKQGRKPFSEFNIGDVIDF
Ga0307986_100172354F019650AGGMKFIPKIKLYATTLQPLLLWLKDNPDDKDIKYTVARLLRYYSNTPKILGLPYMYSEAALSEAIKLEIPEPAEKLKWVTWKEQTNKSGLKDVGRKNGIFHLEHIVPISQIAKKLYELDNLDGTLPIYKILVDNFKIAWILKTEQKLLDSVNRSGVRTPSLLTNLNIFIKGFNY
Ga0307986_100172359F022458N/AMINDWLNQNPDDGFDPNDHGIEMDEIAKLHAMADMKGDQEIWAREQANKFYNDFEGLDIKDSILAVNSLIKTKALNIMQVNTMLDNMIEVFLQDEEFEKCHVCNEIKKGLNNAGI
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