Scaffold Ga0310118_111927

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310118_111927

Scaffold Ga0310118_111927

Overview

Basic Information
Taxon OID	3300031664 Open in IMG/M
Scaffold ID	Ga0310118_111927 Open in IMG/M
Source Dataset Name	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA5 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	729
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9989	Long. (^o)	10.7903	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011467	Metagenome / Metatranscriptome	290	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310118_1119271	F011467	N/A	NTMIDNIRNDEFLTILRSQAGIVQSDLSYVDTEGKLQLDTDMLTKLQRVLLPVLVDALKYIPVSKITSSDKNRDIILDKIVICSYDIIPENIRFHLESDSEFSLQDVEVKGTHTQLFIQLNSLRTEIKDVEFYYKKKSFPALEDSGRVTFRIKGEGAKLSLTYKIDQGPKDKVPKVMEGNAHFDITNLEIDFVTSTLRHTVLIPMLTNLFKVQLKKQIEEQVEKNLKNWIDKLGDMMSSTIS

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