NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307375_10000445

Scaffold Ga0307375_10000445


Overview

Basic Information
Taxon OID3300031669 Open in IMG/M
Scaffold IDGa0307375_10000445 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52094
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (16.98%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007838Metagenome / Metatranscriptome344Y
F014212Metagenome265Y
F021450Metagenome219N
F028047Metagenome193Y
F043160Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0307375_1000044512F007838N/AMKKIFIFFLLFLSVQVFGQVIVVKDPTWKLEDATKDRIEMADRLREYTKLTEQVATERENLQIIKDATEKLKKINRKVANYHNLELAIAQVSDSYSRVLGLLKTLNEHNCFKPSEYHMINESMMGLLSQTSYAISTLTVVLTDNFSEMSDGERLLNMNQAIKELRENLGVINCAIIEVEILDNQRMQLRTLQYVNSIFK
Ga0307375_1000044517F014212N/AMKTKLILALLLISITSSAQLIHVEGTKAIGINGAYVKNGFNVSSRFTFYKSGNLAYRASLDYERVSFDLSKASIVFANPELMYTFYTLGDEVFFNVKGGILTGAEFINNSILDKKKSQFFVGENIGLCAEYFISNKIMLNLDLDQRFFQLSKVGKASFIIKFGINYNF
Ga0307375_1000044525F043160N/AMAKKNFDNLTKNSHLGGGLSNLIPEMNEKHEAEETKIASNEVPKTFTMLIEDYEYLQTYSRYMAFHSNSKYPLKRSLSDAINLLREARPEIAID
Ga0307375_1000044533F028047GGAMEIDMKGVIFRNDWHLLGGKQIDSLFNELFSGVAIQPGIDIVNRLKMLEVCTLEILEDRSSSTVYRIRQTDEVFQIFRPDGKLLNYTTEDYYLQEPIDDLVKEYSMKDPIFKIEKVSDLKDIVHHLKPPKFRALFVDGTFDRVEWIDQPPEDISLVPKLLKKMGAFYTSYVKK
Ga0307375_100004459F021450N/AMKKTISLLAVLLLFSIEMQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALANMGKVLGESRDYKGFITGIVLYVAVYFCLVGIVAFIMAG
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