NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307375_10133992

Scaffold Ga0307375_10133992


Overview

Basic Information
Taxon OID3300031669 Open in IMG/M
Scaffold IDGa0307375_10133992 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1735
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011218Metagenome / Metatranscriptome293N
F015723Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0307375_101339921F011218N/AMNNEQQAKQQQENMQYYTNPSKRRKIDFLLEECASVMANCDYDYNSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDNXPTRS
Ga0307375_101339924F015723N/AMSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNPYGGGSSYTPSAPKTDERSASIIRQVALKSAVEYACAAKHDVNTILANAETFNAWMTGQSAAPASHTEHFANRNDPFXLVLY
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