NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307375_10539404

Scaffold Ga0307375_10539404


Overview

Basic Information
Taxon OID3300031669 Open in IMG/M
Scaffold IDGa0307375_10539404 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)697
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F008686Metagenome / Metatranscriptome329Y
F009260Metagenome / Metatranscriptome320Y

Sequences

Protein IDFamilyRBSSequence
Ga0307375_105394041F000346AGGAGMDKADLKQDKKMMAGAVHKHEKALHPGKPMTKLKTGGKTNGDMLKYGRNMAKIVNQRSSGRGK
Ga0307375_105394042F009260N/AMATYKQPTKVANVIVGEEPAKETMRKANVSVANTRSQDYSPMKTSGIVVRGGKAQTKGKMARGPMA
Ga0307375_105394043F008686GAGGMNYSELVIAIQSYTENQFPDVYLADGSTESSTTQINRFIEQAEQRIYNSVQFPSLRKN
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Institute for Fundamental Biomedical Research
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