NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10000029

Scaffold Ga0307374_10000029


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10000029 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)208340
Total Scaffold Genes224 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)175 (78.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013443Metagenome / Metatranscriptome271Y
F087520Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0307374_10000029100F087520N/AMSVKTFSISMGERAYRQARAEADRAGLSMSAWMTRAAREKIQRDAASATAEADRLTGHDWADWTEANAGDFPPGAGKGAA
Ga0307374_10000029133F013443GAGMITGWLSSEDCPDCGGPLLDVSTDDRFITLECPGCGYAVHWHATPPDPDPDPGEAEAE

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