NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10000108

Scaffold Ga0307374_10000108


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10000108 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140809
Total Scaffold Genes131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)110 (83.97%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000239Metagenome / Metatranscriptome1488Y
F016841Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_1000010869F000239GGAGGMDEFRQRIVRFLEKEIKTYEALSLFLAKKNIQEHVRAGEKTVLLGPSFYKGRMKEAATLVNRLRKPN
Ga0307374_1000010874F016841AGGCGGMTLSGTDVLLVGQNLHGSQSLTERLHRWGFKCHRASSIRAALDLLGSRPFDLVLSNTHLRDGTRFGFLVALAGLPVTVFLCLPVENSCFWLPAMDGGKECLGLLPALRPSEFASTLVEMFRCVAAVPQAN
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