NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307374_10000130

Scaffold Ga0307374_10000130


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10000130 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131630
Total Scaffold Genes133 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (55.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013332Metagenome / Metatranscriptome272Y
F070684Metagenome / Metatranscriptome123Y
F102155Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_10000130107F102155N/AMKFLASVPLEVDRPLSQSDPDVRSLSRLPGFIELEPVSGHAGRYTLKFEVEAGSKRDAMDASDELMVEYENVLNAYHPRLLTALATEAR
Ga0307374_10000130129F070684N/AMATRQATALTTKRYEDSVRPAPRVSFTTPPQPGQRIELEVENLGGTLAAGAVIVQAGDDLYAGELTVPEHAPPRRIYVNPVLKAWQRKNHPTCLLLVGRDLSGKCWDYLDGNKPIEDPHKWLASQLRELRLQGIVDFPAVTGPAKQ
Ga0307374_10000130132F013332GGAGGMRGRKIVLGAAILASLSALVAGPMVITGSAASTTSQSLCIGHHPQEFVWYTSSCTGHDEPEIDPLSNKAGSAQDLTWTVVLPTNGAVQVDSVGPTFWIGGTVSDPHSLFGQAFLELQFYPNSITTGCTAGGGYNVIYAANTYTVCSPVWEVSKTGNSESAAFNAMLVDSSTGGPLTMHAGDTITDHQYVTAAKDGMHITVTDLTTGHAGTIVLNSKIDGPLMPAFSVQKIGNSLGWGLVNDAPNSLVWEIGHTGNYTTPAGQFCLPGSTKKNPCYSYDVPTWLKFQPLQIKGVTFGDGSSAQGWSAVSDFGGKAEVNQDCGAANYGTPFCTYPWYALNGKDNAFTYGGDYPGTTKDFGQVLQFQQEKNCVSPAGPFAQYCSTILR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.