NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307374_10000387

Scaffold Ga0307374_10000387


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10000387 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85280
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (88.16%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003525Metagenome / Metatranscriptome481Y
F010364Metagenome / Metatranscriptome305Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_1000038767F003525AGGAGMLIVNDEQRPRAGIKSLSKRCSYCSLALAAYPLILSDDGGLYVYHAACAVELATEILVDLYTFFRPPASYSQLFVLTASLTVPCP
Ga0307374_1000038768F010364AGGAGGMQSTDIEEIKAALWLQACHGCTRVRCPLGQVMAVRSRKGQLLALCRGWGRWFAVEGVTIERPRQCPTGGCDIAEDPSEEGPG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.