NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10000972

Scaffold Ga0307374_10000972


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10000972 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53820
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (70.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005276Metagenome / Metatranscriptome406Y
F018424Metagenome235Y
F042473Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_1000097211F005276N/AMDDLGAVTDDHVILAWLQAEIESPDFQQYIVGDPPNPAYLSTALKAARSPNLKDDEQNGLRRRIISKTHGFGMGAGSFQGLANDIQWRRFRLATEEVGEMLYASHSGAWVILAPVTRKVTEGATNVGHVFTGDQTNMVVLSLAAGICHSEKKVPEIIALRRPDGRLVILEGHARATAITLEAHRFPHGIDVYVGDSPSVATWAYL
Ga0307374_1000097226F042473GAGMPGSMSTSIAAESLDVDEVGHVLVKLSDVPSEQWMEAFREYWGDAGPTGRTAVKKDAFSHFSERTIVFRGVDVDGFVEFCKPSTQGAIRFANDRTQRFETEREARIRGRAESVGMEQKHVEAERAKARRVKFD
Ga0307374_100009726F018424GAGMSLAVIELIVVIAFAVVGYFIWDRRYHGSNQGGLKPTNEVFKDPTTGKLTRVYEDPATGKRQYREEKS
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