NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10001191

Scaffold Ga0307374_10001191


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10001191 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48813
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (62.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004190Metagenome / Metatranscriptome449Y
F005312Metagenome / Metatranscriptome405Y
F007939Metagenome / Metatranscriptome342Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_1000119114F005312N/AMAQYSSLLGRRVEVTYRAGDIILPATGNLAADSGKSIFLEESYQRKNNVKTFRWEIPYPCIVQLNECPEIPLPSASVKAPREEAAESAPGTATLELKKHPA
Ga0307374_1000119125F007939N/AMLLVFATGVVSDWNHQIASDDARCPYCHLGHQTPAQMKFLPSVSMLKPLASLPLPLDAVLAASPTFSQTAPRAPPSL
Ga0307374_1000119136F004190GGAMFYQISWTTLPGLRGLSCSEFRATPTATPDHERGVAVACASEGESAALVAELETHFGPQRFMNTAAAFDGVKDYVAQRAARQSSR
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