NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10002146

Scaffold Ga0307374_10002146


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10002146 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35560
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001450Metagenome / Metatranscriptome692Y
F002623Metagenome / Metatranscriptome542Y
F035719Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_1000214616F002623AGGCGGLLVREYKESDLDALRRMHASQGFDYPIPDIDDPIFVSKLVLEDDSGCAAMASLARLTCEMYLLVDRDAERAKQNSGGKLSHSTCSRAQARQRYDWLLALHAAGERDLFARGLDDAHAWLPPPIARRFGRRLEALGWIRDDAWRPYCRRLNSDL
Ga0307374_1000214626F035719AGGMEIAIRVSDVLAAEARERGVSVEVYVQELLARSAGRATSEPEIESVRAAIDRLTELRKGNKLGGLRLKDLVHQGHKY
Ga0307374_1000214630F001450N/AMIRVTRETHRTPASIQQRVELAGGVNCFGEANFRVVWGGARLAWIGGRWTDRDASGNVIREAIELRREPKYVPHDRWHIERWMPPEAYGSPELWRAQTTEVEGGIAIPALGPYPSRGEYEHCFTLSGVRGEFIPLSPAACDWIVRAVEWARRQPRGVRRAAVGARESRRTLDFDHAADDIFDDSAPAFHAQPFVPLANR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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