NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10115130

Scaffold Ga0307374_10115130


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10115130 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2249
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007516Metagenome / Metatranscriptome349Y
F013724Metagenome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_101151301F013724N/ANLLDSRRTIEYRYFDSSLDPARLQANIKLACWITKRASTLPDSAIPTERVRLGSHAAGQVPDPGDGLLRRFADTIFVRPQDKLKLYWLFQRSAWQPARRTA
Ga0307374_101151302F007516AGGAGGMYRLINPTSERELSMRMLFQPTGEGTFHRACEADGYGGLVAAILGDPTYESGDIETRLVTRLRLADELVLLGEVQRQQTVHVADRDADHTINVASDERFIRSLDRLGYVSLEPSVTDYV
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