NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307374_10207309

Scaffold Ga0307374_10207309


Overview

Basic Information
Taxon OID3300031670 Open in IMG/M
Scaffold IDGa0307374_10207309 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - OX-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1392
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049117Metagenome147Y
F064933Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307374_102073092F064933GGTGGMPTLKPRRVQVTLDRELETAVRELGGSKPRSRAVHDLAVRGAEAIRAERSARREAYEHLRRIATGEDDRYDFAVSERLHAER
Ga0307374_102073094F049117AGGAGMASMAKAQISGNGKIKRLSPEELAELMVPATAKTPEEKRAAIKRATTGLRANVRVTRDMYRPR

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