NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307377_10040138

Scaffold Ga0307377_10040138


Overview

Basic Information
Taxon OID3300031673 Open in IMG/M
Scaffold IDGa0307377_10040138 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4068
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F032245Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0307377_100401382F032245N/AMQELFSKILQQGLTPNAVYVLYCIKEKVKCSDSVNFSLEVVKLKSGNYLTENLELSGNSLKFMQEIEGYFKKSKKKTSQNLLGDHFLDKIKQYNEIFPNKKLSSGKYARVNAKSLENSFRWFFENFDYSWETILAATAKYVDEYSLKRYEFMRTSQYFVRKQSSDKTWDSDLATYCDLVVNGHDEEQENYFQERVV
Ga0307377_100401387F003038N/AMALSTTDLGTGGSGLPKTITPGNHVLKINNIELEEFKFIPGAFHLMLHVETQPIEGFEGFMIDKDDESKGRYTGQIGRVKASQYAFADGETKSGIKIQRDRSILIFLRTLAHTMELDSWFLEQDGQHETIEDFVKAFNKTADYKNKFLEFCVAGKEYEGKTGYTNYDMWLPKAEGKKYAYGAVEGGA
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