Scaffold Ga0307377_10055818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307377_10055818

Scaffold Ga0307377_10055818

Overview

Basic Information
Taxon OID	3300031673 Open in IMG/M
Scaffold ID	Ga0307377_10055818 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3329
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076658	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_100558185	F076658	GGAG	MWYRYYITVPRGTDWRTPVTKEIGLPEGVITKVRVRFPPGPRGEVFTAVFQGTSKMWPRGEANWAWGDDEPIEMTEHVRNITGWHWTLEGYAPDSIYDHTVWWDFNVLEQEYAEPYSAVQRLVELLKEVIGL

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