Scaffold Ga0307393_1081694

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307393_1081694

Scaffold Ga0307393_1081694

Overview

Basic Information
Taxon OID	3300031674 Open in IMG/M
Scaffold ID	Ga0307393_1081694 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-5.R1 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	693
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-59.0467	Long. (^o)	0.0779	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027739	Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307393_10816941	F027739	AGCAG	MTEICGIIGDLKREDQGVYVFPCLTLLGYDTKEEPLKRLQQLGYRLGDEDSRYEGVEIKQSSPFKLMRTLAKEYGYRPLKVVNSPAPGGRTCLMWTLMGGKGEGGLEAIGIVADVKRESEGEYVIPTSTIFGLDMAECRQLIEEGLKVADADPKNDGVEVRGASPFKVMRILCSKYGWTTDGEVVSTEAPGGRTAAMWTLTRKVA

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