NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318561_10529857

Scaffold Ga0318561_10529857


Overview

Basic Information
Taxon OID3300031679 Open in IMG/M
Scaffold IDGa0318561_10529857 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003145Metagenome / Metatranscriptome505Y
F083294Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0318561_105298571F003145GGAGGMQLKEAYLNRVAREVEDLSSRIAILKARFAKQKVNVKLEHYWELEFLRTRFAEFKHRVTDLEDAEDAQLSKMQESVEVAWNDLIN
Ga0318561_105298572F083294N/ALLALSARREKQDALARKNLKELTEEFPGNAVYDTEYAKALGHSIPATIGPAN

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