NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308011_10003129

Scaffold Ga0308011_10003129


Overview

Basic Information
Taxon OID3300031688 Open in IMG/M
Scaffold IDGa0308011_10003129 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #177
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6817
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034597Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0308011_100031295F034597N/AMIKSFEIPWDNNIKETISYEDDITFGDLEAILNQCLDMTQVNEPKVNLPLYRQLILTAVITKAPFAIKEVASIRNLKASQAKIIMKEVMKDYPLAKYLEEWVETFVGQAIVEEPVVSTTSSQGNSVGRKTKSTRSQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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