NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308011_10012489

Scaffold Ga0308011_10012489


Overview

Basic Information
Taxon OID3300031688 Open in IMG/M
Scaffold IDGa0308011_10012489 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #177
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2992
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043079Metagenome157N
F083239Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0308011_100124895F043079N/AMKNAQAYKGESMAWKIVSKIVDTYELSPSDTQHEYIVYVQDDVGANIAARTVYGMKNRTEVTKELISEYSEYGIVKIEHED
Ga0308011_100124896F083239N/AMEMTEENYLDLTIDEVYDVIADDTIWPKSFDLTKKIAFINHMIIYFEKNEEYEKCASLQGRIHGMEDSK

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