NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302139_10384277

Scaffold Ga0302139_10384277


Overview

Basic Information
Taxon OID3300031693 Open in IMG/M
Scaffold IDGa0302139_10384277 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CBN3_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)559
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)139
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026397Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0302139_103842771F026397AGTAGMKKTFKLLFLTSLFFIIGCDDITFHRKPIISVTVSPDCHDLYKDDNLYIYISRLGTDWDSDMYVDVGSTEDLSVFVEGKYNITAIASRKKLTGSNYESIKSIYIYDGEERNVEFHCD
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