Scaffold Ga0307929_1035250

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307929_1035250

Scaffold Ga0307929_1035250

Overview

Basic Information
Taxon OID	3300031697 Open in IMG/M
Scaffold ID	Ga0307929_1035250 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #1330
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1578
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Schmittlotzvirus → Agrobacterium virus 7-7-1 → Agrobacterium phage 7-7-1	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	13
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015962	Metagenome	250	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307929_10352503	F015962	AGGAG	MSRHIEYGNSPVGRLISGDPWVKQTTDANNRPIPDDKQSFWFAVAIEKNAPGMNEMLGMMFKAAQAGYGQAPQVMAQINMGLAATAFSWKIVDGDEMRANATTGEQELRWKHGKGCWVVKFST

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.