NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302120_10146114

Scaffold Ga0302120_10146114


Overview

Basic Information
Taxon OID3300031701 Open in IMG/M
Scaffold IDGa0302120_10146114 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)625
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022430Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0302120_101461142F022430GAGGMSDYIYENRQLALWAEYDQLKGRISFEAFMERHVNVNAYIVNLLKKFGTVSAEIDRSESAKRFAEMDLVQMGD
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