Scaffold Ga0315291_10257451

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0315291_10257451

Scaffold Ga0315291_10257451

Overview

Basic Information
Taxon OID	3300031707 Open in IMG/M
Scaffold ID	Ga0315291_10257451 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1738
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5895	Long. (^o)	-110.359	Alt. (m)		Depth (m)	92
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014365	Metagenome	263	Y
F034507	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_102574511	F014365	N/A	MKTFQLFRNVSYEYFVEAETLEEAKNKIMTENPNYESEELIEWVFLDEHDGADWKYE
Ga0315291_102574513	F034507	AGG	MNNQKLEWQPLWDAMEANPSEWIETTQKMYWDMLESVPPRAQNSRGFLVGEPLSDNAEGYPIYSCFKKSGDNYYAKNLTLSEFRAGI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.