NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_100740771

Scaffold Ga0310686_100740771


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_100740771 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6833
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039385Metagenome / Metatranscriptome164Y
F049128Metagenome / Metatranscriptome147Y
F105605Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_10074077112F039385AGGGGGMTNEQIKALAAVRAAFVAAETTGLTEAEIWRAAVSGQAHPEVKSGRPPGNYNPISDCLDKPKNKAHHG
Ga0310686_1007407713F105605AGGAGMQETLISNASHNCRSIRTRTALAMALVITAMGIAATPAAQAAGNSSKNTDAPANIVSHVTLTDGKVTRMLLVKRNGKEYLALGLDSSAQVAIVDVSDSRRPHALDSAAPAPGKPGAEINVLADNLSLFGKSDAAAPASPDPKELRSFSGVTAFVIDAAHGLIYATNNDGLWIVKTSRQAADDARADNYGG
Ga0310686_1007407717F049128GGAMHSTKTNARVIFKLFGQAPMQATLLHRNRGGFWIQGGKLAQFLGGCDYSGVEVDVCFLSANKVEWYKNASANAHGAETGK
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