NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_100978120

Scaffold Ga0310686_100978120


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_100978120 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5231
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001426Metagenome / Metatranscriptome697Y
F003382Metagenome / Metatranscriptome490Y
F012600Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1009781203F012600GAGGMTSDSKNGNDPESTFSFGVRELRQANVAQKLSLDEEPLKAANEKRGVDPYNTSGSFDRKKNWMRVGKR
Ga0310686_1009781205F003382GGAGGMGLTSPWSVELGLAAVALLIGLGVMPILIFYAGAATLGRYEGASLGRLYHTLLVGLGQASIASWVVFLGPYGLYLLFKGLRAWWRGAAHAPS
Ga0310686_1009781206F001426AGGMRPWTPQTLYDAKPWAFIGIGVILAIGTMLWSLSAGLWTVWRGLLCFGGAALAIVGGATLQLRQDYRARSKWRRDAPP
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