NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_102064995

Scaffold Ga0310686_102064995


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_102064995 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2099
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1020649951F036810AGGAGMSQREGRCVPIVNRLRSFAVDEYKALQLSIERRSYERKLESIVRAALAHQSGGLSAGNRQYKLLTTQANSICVDFTSRWNIDPNLLDAQIPAIAKLKALADPAPRPEPVVLVSLGVAAAVAFFFLMGVLAGLTSVGYHLMGGR
Ga0310686_1020649952F070426GGAGGMILEIIAATEASVLSASWIRRSRMRRREILLGGSTSEINPPFLDRYLRQQTANPTRLQTIVAKKLAAVCRRVVQTQAFELLVLKLIQSVSRRFGRDSEISKVEVIL
Ga0310686_1020649953F045709GGAGGMNLTPSQKGSFLAGVGLWVLIWASLWKADDIGEAMHIQRWVNSTRCLRWISQHKSTSLLGTELINYGSHGLDPLGVSFSLGGTLVNVLFIYLLLPGLETLLHRRGTDSAAQ
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