NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310686_102447334

Scaffold Ga0310686_102447334


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_102447334 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)497427
Total Scaffold Genes477 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)352 (73.79%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000482Metagenome / Metatranscriptome1089Y
F000840Metagenome / Metatranscriptome866Y
F005676Metagenome / Metatranscriptome393Y
F006104Metagenome / Metatranscriptome381Y
F009977Metagenome / Metatranscriptome310Y
F016551Metagenome / Metatranscriptome246Y
F021013Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_102447334183F006104GGAGGMDHFVRLQLVGRVTYYVGWIALVCGGLVHLNVATTLFATMQLSQRNLFEAGVVCFLICIASELRARDFAGKDMPSVLKKAA
Ga0310686_102447334226F000840N/AMITLNERIAKTQRLLRRLEEDQPYLSVRLSALGADHRRSANAFAARMRAEAEAELQRLLAEQALPMEWTVPQPAD
Ga0310686_102447334231F021013GAGVHLGNCGPGRFISYPTANQFDVLCPRTNRIRLIRVDADSRELQNLDIVLPWERRVGAAMAIETSDSQVISIVRGDGAVFEMNIATQQFTETTAHPVLPNRVPPATWPTSPDGSRVYLGYNTDYDHNYDNRFYLDYGRSPNLRPSNALATEFRVLDTRTWKKIGTIKTKMPFWSAVTRNDGTILYAMAPQKHSILVIDAVKMHQSNILKIGGAPTLALVAP
Ga0310686_102447334251F009977AGGAGGMNLLQWLSQHAVPFTLILAYVPLIATVVTTVVSLILARATVRYTESSDRSLALAREQFEREWAPELHIKLERLSSSDARILATNLAKISVLMQMVQLRKLSMAVPSLRYFLNEPLVGGTTWSEDLGKRFFACTGENYEGQIAVSITFYAAGRMYRTDWFRSQVQVHNSKLVRLDPVNISARRVRALEPRNGSGSTRRELVRDVVRNAADSDGKAAAAAVGTREG
Ga0310686_10244733426F000482N/AVNVDQTPVTKVSEVTLPGLRSSRKILMMQVSRTHLAIALGSGALLVLVFLGYLYWLSNQPPVLSRSEERDPLTQMPISITMNPFRDRTIERTANSFIAEMRDGNCRKLLGQWERDYRKKRADFLCNSETQHPLISWTLVEWEDAPPLVILHYKGQRYSTPAQDSTYKDLFSVTEEKKDDGWTVTKYDSFY
Ga0310686_102447334281F005676GGAMTPIPMPPDALETLRQVNENLRSVLLRLRPERKHCSSIRPQDFSDILSQLLRAAECLRRPKPTHSKATVALEKESLEYGSNLEKLKHFLPDVQVRLLAEKSRLETARTHVATAAAWAQARKKAL
Ga0310686_102447334437F016551AGGAMSIQEVSAERFAQLFHCYHQALVDDSGSASNLRMKDAWEHVPPSEKSKLIAAARLALLEVELVPGERQSRRYFAKPGEAEWGC
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.