NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_102515085

Scaffold Ga0310686_102515085


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_102515085 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7867
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038768Metagenome / Metatranscriptome165N
F055038Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1025150853F038768AGGAGMIGLFLYLALGVGLLVFLWALARRQGAPVEGCGLQFVEARQALRTLQFGLLPENLIARIFDPEDFRYVTAASPEEIGKLFLEERSRISLMWVRRVRSEIRNLMHFHLAYSRLHAKLSLLTEIRLALDFALLLLACRALRILLYLRGPYGARAVVRVLTAAAGRVCAASEKSLAFLNPPALESFRRDSAGHGAAI
Ga0310686_1025150854F055038N/AMLSMLLWLAGLFFEFLLLVRCVQTKTLTKYIYFYTYIFCVFAVSAGLYIGHTISPAFYDAWYWPTQFATLGIGFGVVLEIVRQALPAYPGAERIARLASCAVFIATFCYVEWHVASRAQWTTANATVELERDLRVIEALVLATVLAIVFHYRIELGKNATGMILGFGAYVGVSLTTLALRAFVGSRFDTAWGLLQSASFVFATAVWTVALWSDSPNPKPPDVGSGYDALVHDTRERLDSLRSQLRGVAR
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