NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_104505246

Scaffold Ga0310686_104505246


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_104505246 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4816
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F026617Metagenome / Metatranscriptome197Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1045052461F026617N/AYTGRKTATDKTRKWSPWTIAANASALIERTDGTAVVVMGGGVPGVGGAGATGKAYQLNDAQLSDDGSTIRSYYTTHYFPERAVEQSLNLGAHRKLFSYLTMFVEGAGNLSLTSFTNSPSAPQSQQPLPLSSPSFKDLELPINILGERVAFQVSTNQPGAWFRLQKFTPSVRVDPWAPVRGMN
Ga0310686_1045052462F000781AGGMLTVAQLAPLKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPTAVASITVQAANGWFDLSITDPSDARPGLFYFAESDTTPAFGAPRVYFLGASRNLYVQLGNQTLFWRAYSQYIGSQPSAPITFGSPPAAVAGGGSTGPAPLPSTGSGALPNGLLRGGNGFGVNPGSRIMRQSVL
Ga0310686_1045052463F000703N/AMVAKLSGEVFSPTRCGAPVQAIAVAHKIFRPEGLSYSGSYKHAQMLIREYQEKDLSALRAIHAAQGFDYALPDLSNPLFVTKLVLAQKEVAPGLSPAAIAAPAISPDAALIGGATNSQPDHILGAVLLRLTAEAYLLLDPRAGTPRERWHWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGKRVARLGWLRDDAWTPYCKKLAVRE
Ga0310686_1045052464F099605AGGAGGMPNTNQSASWDFSPNDPVNLTASFSFDTEDTQDNAPVATALAAIQGRIAHATVTAVQSDPATITVTVSI
Ga0310686_1045052466F000624AGGAMPASWFAILAAILSVGVQFVLFLRWLHRRMRNDEIVHAFVRDIATNHLPHIYNALQLIAAEQGIALDETPLVRFVDLNGHRRHL
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