NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_113592708

Scaffold Ga0310686_113592708


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_113592708 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48053
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (91.80%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011867Metagenome / Metatranscriptome286Y
F028227Metagenome / Metatranscriptome192Y
F092536Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_11359270811F011867GAGGMQLPALKNTVPASLIDGMSIENFIKNSTTNLQRIPTGGGGGTGIAGAIYLGFDGNTGKWKLNRETVEADDVGRILVPQHTMFEGYIEWAANMPLQKVQRPLLGVEHAEPMSERMLPRPLSPGAYKKDTDGPNYMLGFAGLMLDDGGTIVFEHSSQGAKKGINALATNATQAITAFGEIVHPVIELSSSSYENRNSGRTTHDPKFNVIGYVTDKRAREVTVIADSDIITRPTATKAKLRRGGSEAPAI
Ga0310686_11359270828F092536AGGAMNQPRKAGRPRIEDRADTNEAEKPWLKLGMSRSTWYRRQAEQRKGRE
Ga0310686_11359270838F028227GGAGGMTKAAASLAVVALFGLGVVGQPSAVKAQPYGYPERVDWKVGPGSFGFSGYPWPGPPFAWPDLKPTYGCYFTRARLKNAWREVEVCS
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