NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_115050998

Scaffold Ga0310686_115050998


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_115050998 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3293
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005983Metagenome / Metatranscriptome384Y
F006433Metagenome / Metatranscriptome373Y
F007657Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1150509982F007657GAGMSWVTFEVAGGGLVAVQPRHVVAIYDELGAVKLATAAGGVHILKDMTVQRATAIVSRAADADATRAG
Ga0310686_1150509983F005983GGAGMQAETKDDGLITYDFEEFCNDYGHPAGRLFTFEVTHAAVTYIYADVIGTVRGSEVVFCLNADDLVLTRKAH
Ga0310686_1150509986F006433N/AMAETTYRILHREDDSFAVEVVRSGVLPQTAIGFATESEAQGWIAQDKRLWDAADPFRTQASRKWRGF
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