NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_116089199

Scaffold Ga0310686_116089199


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_116089199 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28097
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004030Metagenome / Metatranscriptome456Y
F034634Metagenome / Metatranscriptome174Y
F036798Metagenome / Metatranscriptome169Y
F069103Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_11608919913F034634GGAGMSAFTHLVDGLFGLAAVSSFAGFVFHLLTGNPDLALMCFVGIGGSAAMVWMFTSCRRA
Ga0310686_11608919916F004030GGAGGVLRCAVEERQAREEFDTALARIRHEIKGRLILHGFFGRVSYTDIEAADHILSGSTVEIAVKGRTVERSFSRQEIEACCLRVGGAVLSGVISMVDELSPHD
Ga0310686_11608919920F069103GGAMALKPRVFDDLLHFASTSRSRSTVTLAAISFAVCHLIVMGTGSAGFSGSADLGVDIPRQLIHFVAELCRFALPLGVMLVGLIRS
Ga0310686_11608919929F036798GGAGMSTRSNDPFTAALLIGVALVTAGALLLRQSVDLAHSIDLARSWPLFVIVLAFAQMVATIKERHQQGWGLLLAGNWLLANTMTNWAYIQISVPVLLGGLGLTTIIRGLRDYSGHLDENHRATR
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