Scaffold Ga0307385_10000687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307385_10000687

Scaffold Ga0307385_10000687

Overview

Basic Information
Taxon OID	3300031709 Open in IMG/M
Scaffold ID	Ga0307385_10000687 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-2.R2 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5160
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	-49.0129	Long. (^o)	2.8377	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307385_100006873	F085090	AGGAG	VCQDLLGWLARLDQSVSLDPLVYRAALERLDHRDSLEPRATAVSLAFRVFLDPLDPKDRRDLQAKTERTESQVQWAGVVLQDLTDLWVVWATLVLLDQEDHQARKAREVHPASLVLLGLLALRVRAMEWTWLP
Ga0307385_100006874	F094857	AGG	VEKLDQEECLEIWDHLVGLENLECLVKLADRALLDPLGCPVKRVQMDQEDPQAKEDHRDLKACQAWKAEREPLVLTDQMDRPDHLDPVDLLGIEEFLVYQALLAQQDPQANKDHKEKGEILASLESKALRDLLDLLVLLGLLVSEASGVRRVHQESRELQGWAVDLVTRVHRVQQE
Ga0307385_100006876	F104391	N/A	MKENEDQQASLEKGECPVSLDPLDQEVKMVRKDQMVNLDHLDPRDHPDTKDPLGWLVCLVSEEFLGLKVLRVEEVIRAFLDQLVLMAEQARGVNKELLVLQDPLGRLEVLEIQGRQGLSENRGQLV

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