Basic Information | |
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Taxon OID | 3300031712 Open in IMG/M |
Scaffold ID | Ga0265342_10234091 Open in IMG/M |
Source Dataset Name | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 985 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Seattle, Washington | |||||||
Coordinates | Lat. (o) | 47.6516 | Long. (o) | -122.3045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013791 | Metagenome / Metatranscriptome | 268 | Y |
F095767 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265342_102340911 | F095767 | GAG | MRSRCCTIDSSCIIALDHLQLVPQLSMLFSPVLVPKAVRKELFKRRATKDRLQIIFSTYGFFQRCDGYDQGAVDFLLAERTRLGVKDRGEVEAVVQASQAGAAVIVDDRWGRDLAMRFDLDFHGTVWVLQQLNQIRLLSSTLGECFAVLRDRGVRMPWQ |
Ga0265342_102340912 | F013791 | N/A | NSGYNWGSRFIMQVFISYGDVEDQVTALRLQALGAVNGLTVYVPPAHTRRGMPTLLDPEASQKLHRAEVVLGVVGAGLTEACRQELNAGLSLHKNMIVMVHPEFAHLQSHFGSNLVVVDPANPDQAEYGIVQYLKSLDAQQTAKTALLAMGTLALGLLLLAPADRS |
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