NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265342_10642241

Scaffold Ga0265342_10642241


Overview

Basic Information
Taxon OID3300031712 Open in IMG/M
Scaffold IDGa0265342_10642241 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)533
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025825Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0265342_106422411F025825N/AMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRITNANETATSLTHQLAYAVFNAVPDFGSTSIDTNNPAAVRRALTDYLQTDVALNNLLQSDPGDWRFIYDVTILDINGKALLHTNAGLVGKVIAPRPDFQKVVGARFRQQIRLVFSPAAV
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