NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318496_10094148

Scaffold Ga0318496_10094148


Overview

Basic Information
Taxon OID3300031713 Open in IMG/M
Scaffold IDGa0318496_10094148 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1602
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001943Metagenome / Metatranscriptome613Y
F041570Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0318496_100941482F041570AGGAGMLEPLFVAELDYQPGMAPLTSEGDGALIGSGDGAVHGPNLTGTLEWTLFEQPGSTMCAIGPVARIITGDGARIRFEGRGYGIRRSQSDPVWRVAATLHFTTGDSRYSWLDGALALWEGEFNETTHHARYTAFI
Ga0318496_100941483F001943GAGGVVPGGLAGYAAAVARHKHRRCRPVPDPDMLLAQLRSADDEVRVKALHRVCPCGAGFVVYERFRGEVKRLQKDPSPRVRAAALHAEQDACLIEELDANLDRAGEQGWRYSDADWVQAKRRRQAARYWLPL
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