NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000002

Scaffold Ga0307476_10000002


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000002 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130236
Total Scaffold Genes1115 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)774 (69.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003563Metagenome / Metatranscriptome479Y
F013261Metagenome / Metatranscriptome272Y
F062939Metagenome / Metatranscriptome130Y
F075093Metagenome / Metatranscriptome119Y
F093781Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_100000021084F062939GGAGGVTLARVLLAAAALAALAACSFENRNEREADRITRAVIDNDLRPVQNDIAKGITITRVKVAQWSDELSAQGKLLSVKETAGACDPGWHCFNVKFQKHDYVERMRFDENGKVVDWDFHMAPAPT
Ga0307476_10000002158F003563AGGAGVKTPGLVGGLLAVALCSACGSSGVAPPSAALSERYVGRTLFVNGTPVTAARVNLSPPKRYATTLPDRDLDSKTFEYVINDYGTYAGIFKYPHGDKEIGKIYNVGGQGCTNVLYGYGKKTFWIVAGQTQITEYKILKAPIKTLSVAFSFPSSCAMDSNGDLAVGILYASGAGGGDVVIFKNASGAGTVYTTPLDEEFFDGYDNNGNLFADGFTGNRSGFALVELPKGSANFETITTSNTVNFPGSVQWDGTYLTVLDQTADAIYQYTVSGTKATLKGTVHLTGAGDCAQTWIVQGIVYCGDAGNGDGEVFKYPAGGSAIAVFTGSFDFPLGVVAAER
Ga0307476_10000002499F013261AGGAGMVKSLVSRFVSSAALVCLTAAALTSAASAQTTTPNMHFTTKITEVYGSPYPITGRLDIQIFPAGNLRGYYHTSYYKLYIPVVGGRDGNYIWFDIGPSVVDLGLGAGPGGRLHVVGTMSTDGSFRGQVYPETAAVLTGVVVVGPTPNPTPNLAEQYIFAATPTNEPEPTVSGPP
Ga0307476_10000002589F075093AGGMKSAQRVFLSLTAAGALAACTHSNYMPNVIQLSPKGTASHPADQSIAKSFELIAVEDGYTGEFSAQTIVGTCWVVQAPIMTGGAWTVVPQGSSCSHLDTEKIQVKDTNGHSAVTYIRSVQ
Ga0307476_10000002800F093781AGGAMRAVGLIVTAFILALNAPALATGTVRIQQRDGSVQTYTGVTLKVANKTLTLISADKVSTVVISGADCAHDGAIVRCVGGGFSLLQDGKRHTVAFKTATFYFNLTDQEQLLPRSTTKIAPHSVIFAVKTAKGTSVTGNGKLDQEPAQ
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