NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000007

Scaffold Ga0307476_10000007


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000007 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509545
Total Scaffold Genes476 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)370 (77.73%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000380Metagenome / Metatranscriptome1210Y
F000793Metagenome / Metatranscriptome889Y
F003278Metagenome / Metatranscriptome496Y
F003894Metagenome / Metatranscriptome463Y
F012825Metagenome / Metatranscriptome277Y
F023475Metagenome210Y
F024875Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_10000007161F000380AGGAGMPLQAQDQETLNVKLVHFTKQNSPDEPVQFAFSVTDEQGKEEIITGEIPYSYDLFRVFQEQGWLNLRRGVSSIRETSRGQRRAMSA
Ga0307476_10000007202F023475GGAGMKFFLITLFSLATFPLSAQTFSCPTGQADVMKYFVMGQERRADHFLDGKPNPIYTHVFPSADFADQGYWFWLKSPKAHGFDVKSFDQKYVYMRSTELEWKDNTSFKRFEHDLSIAERCVAEGQPGPEIKVSNTRFSYFSSCRPYKSSSVGTAVNDLDAPSLMDAGGNVGKLWTRILHYHYNCDRGFENCKDEEQFYLGNGYGLWQWKHFKNGEEVKSALMNLLRVGQPDATLPCEESYR
Ga0307476_10000007272F003894AGGAGMQYANVVLLQSDPNIAKTLAAMLSNSFHQVHVARSVDELRHATVKHRPTAIVLDLESASLAEVEILKKEFEGVRVICNHRVADEEMWTRTLNVGADDCCPSSDMRGILSSAVRDGQMSQRMVA
Ga0307476_10000007305F024875AGGVPIIVDSRFEALESAPLDKWIALSDDESKIVAIGSTYDEAVANSEKAGVPDPVIIKTPKAWAPLSV
Ga0307476_10000007312F000793GAGGMNLQWLSQHNISFTLILEYIPLIATVATTILSLVLARATLRYAEASDKSLALAREEFERQWSPELHIKLEKTSSRQARIVVTNLAKISVLLQMVQLRRLAMGVPSLRTILNEPLVGGTTWTHELDRNLFTCTGDDYQGQIAASMTFYASGRLFRTDWFRFQIQISHGEILRLEPVNIAARRVRMLDGTGETTEELAQDVVKTNAAHA
Ga0307476_10000007351F012825AGGAMPPHRQILIIAFSTGITAGLASSLSIEWMRYLMVVLIGVVGALFWQVNEVREEAEKHVVRAVSHHLNNSLTVTMNRRYLDPDTREQIVDEELQRCAWVIQTILPSLKVGLLELLNIKRHSYPGRWAQPEEKWWQQQPPTVH
Ga0307476_1000000745F003278GGAMLKISLIDRRSQRRLVLEGKLIAPWVAELRSAFESARADLQGRELVVEMKHITTISQEGENVLLHLMTEGTRIRCCGDVFTKHVLKQLARRASRDVQETK
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